Fetch KEGG pathway maps

Source: R/kegg.R

Downloads basic KEGG pathway maps

tor_fetch_kegg_pathway_maps(pathways, download_folder = "kegg",
  overwrite = FALSE, kgml = TRUE, species_png = TRUE,
  general_png = TRUE, quiet = TRUE, ...)

Arguments

pathways	data frame with columns kegg_org_id and kegg_pathway_id
download_folder	which folder to download to (relative to working directory or absolute), will be created if it does not exist
overwrite	whether to overwrite existing files
quiet	parameter passed to download.file
...	additional parameters passed on to download.file

Value

returns the unaltered pathways data frame